NGS
Next-generation sequencing technologies (454, Illumina, Solid, Pacific
Biosciences...) have opened new opportunities in evolutionary and
ecological genetics, and raised new bioinformatic challenges - dealing with
millions of short sequence reads to be assembled de novo, or mapped onto
existing genomic resources.
Major developments in MBB:
- de novo transcriptome assembly from NGS data in nonmodel species, within the PopPhyl project
- ContigMaster : a program for assessing the quality of de novo transcriptome assembly by comparison to a reference
Other tools:
Contact:
K. Belkhir, N. Galtier
Contributors:
ISEM : Khalid Belkhir, Nicolas Galtier, Rémy Dernat, Julien Veyssier ( and previously Sébastien Harispe, Guillaume Dugas )
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MBB platform Version 0.1