Downloads Population Genetics

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Software

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Detsel

  

R-package program to detect markers responding to selection.

Author(s)

Renaud VITALIS


Version

0.8


Platform

Linux - Windows - Mac


Source

Yes


Downloads

0




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GenClone

  

GENCLONE is designed for studying clonality and its spatial components using genotype data with molecular markers from haploid or diploid organisms.

Author(s)

Arnaud-Haond Sophie and Belkhir Khalid


Version

2.0


Platform

Windows


Source

No


Downloads

0




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Genepop

  

Genepop is a population genetics software package originally developed by Michel Raymond and Francois Rousset, at the Laboratiore de Genetique et Environment, Montpellier, France. Genepop runs under Windows, and can also be compiled to run under Unix or Linux. It will compile on Mac OSX machines if you have the developer tools installed.

Author(s)

François Rousset


Version

4.0


Platform

Linux - Windows - Mac


Source

Yes


Downloads

0




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Genetix

  

Set of population genetics programs

Author(s)

Khalid Belkhir


Version

4.05


Platform

Windows


Source

No


Downloads

0




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Identix

  

Permutation test of relatedness

Author(s)

Belkhir K, Castric V, Bonhomme F.


Version

1.1


Platform

Windows


Source

No


Downloads

0


Tags

ISEM




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kim_t

  

Estimating divergence time on population trees from dense SNP data: a Bayesian model based on Kimura diffusion equations.

Author(s)

Gautier, Vitalis


Version

1


Platform

Linux


Source

No


Downloads

0




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KSimPop

  

Build biological populational model

Author(s)

Jean-Baptiste Ferdy


Version

1.0


Platform

Linux


Source

Yes


Downloads

0




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Migraine

  

Migraine implements coalescent algorithms for maximum likelihood analysis of population genetic data. The version available through this page implements only a limited set of models, as described in Rousset and Leblois (2007): essentially a simple model of isolation by distance in a linear habitat, including the island model as a sub-case. The data handled are allelic counts.

Author(s)

François Rousset and Raphaël Leblois


Version

2.0


Platform

Linux


Source

Yes


Downloads

0


Tags

ISEM




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Neutrallelix

  

Monolocus Neutrality Test

Author(s)

Khalid Belkhir and François Bonhomme


Version

1.0


Platform

Windows


Source

No


Downloads

0




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Partition

  

Partition is a model-based statistical software package for identifying population sub-division and assigning individuals to populations, on the basis of their genotypes at co-dominant marker loci. The underlying population genetic model is appropriate for out-crossing diploid organisms.

Author(s)

Khalid Belkhir and Kevin J. Dawson


Version

2.0


Platform

Windows


Source

No


Downloads

0


Tags

ISEM




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PartitionML

  

PartitionML is a program that searches for the best possible partition of a sample into independent panmictic clusters and simultaneously assign individuals to them using a maximum likelihood (ML) criterion.

Author(s)

Khalid Belkhir and François Bonhomme


Version

1


Platform

Windows


Source

No


Downloads

0


Tags

ISEM




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PopPhyl

Tool

  

The PopPhyl project provides a set of publicly available tools C++ code to achieve SNP and genotype calling (with home made algorithms). Also are provided wrappers to use this tools in the Galaxy platforms.

Executables tools

  • Reads2SNP C++ executable (Static compilation for 32, 64 bits Linux and binary for MacOS)(download)
  • dNdSpiNpiS C++ executable (Static compilation for 64 bits Linux)(download)
  • ORF extractor perl script (download)
Galaxy-related tools

Author(s)

Nicolas Galtier et al.


Version

1


Platform

Linux - Windows - Mac


Source

Yes


Downloads

0


Subsections

Tool - Mapping - Assembler


Tags

ISEM




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Sources

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Genepop

Genepop is a population genetics software package originally developed by Michel Raymond and Francois Rousset, at the Laboratiore de Genetique et Environment, Montpellier, France. Genepop runs under Windows, and can also be compiled to run under Unix or Linux. It will compile on Mac OSX machines if you have the developer tools installed.

Langage

C++


Downloads

0


Tags

ISEM




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