Results

1 -> Alignment (ClustalW / Mafft / Muscle)
2 -> Gblocks
3 -> Phylogenetic reconstruction (Phyml / RaxML HPC MPI / MrBayes)
Under developement

Author(s)

MBB development Team

Version

0.0

Subsections

Pipeline - Phylogenetic reconstruction - Alignment

After read cleaning this pipeline will call Abyss for denovo assembly in contigs. The resulting contigs can be further assembled with CAP3. The contigs are then blasted against a provided multi-fasta file and/or ncbi databases. If a blastx on nr is chosen the result can be used to annotate the best hits with blast2go.

Author(s)

MBB dev

Version

1

Subsections

Pipeline - Blast - Assembler

Tags

De novo

AAA sssss aaa

Author(s)

Khalid

Version

1

Subsections

Pipeline - Assembler

Tags

De novo

IDxen : EPA on mitochondrial reads.

Author(s)

Julien Veyssier

Version

1

Subsections

Pipeline - Tool

Tool to upload new reference versions to IDxen.

Author(s)

Julien Veyssier

Version

1

Subsections

Alignment - Phylogenetic reconstruction - Pipeline - Tool

Align coding sequences using MACSE (OrthoMaM pipeline)

Author(s)

Vincent Ranwez

Version

0.2.0

Subsections

Pipeline - Alignment

Tags

Apps