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NGS
A pilot study to assess peripheral blood TCR β-chain CDR3 repertoire in occupational medicamentosa-like dermatitis due to trichloroethylene using high-throughput sequencing.
NGS-Indel Coder: A pipeline to code indel characters in phylogenomic data with an example of its application in milkweeds (Asclepias).
Validation of a Next-Generation Sequencing Assay Targeting RNA for the Multiplexed Detection of Fusion Transcripts and Oncogenic Isoforms.
Novel microsatellite markers discovery in Patagonian toothfish (Dissostichus eleginoides) using high-throughput sequencing.
[Exploring the association between SPRY gene family and non-syndromic oral clefts among Chinese populations using data of a next-generation sequencing study].
Single-cell RNA-seq reveals TOX as a key regulator of CD8+ T cell persistence in chronic infection.
Defining housekeeping genes suitable for RNA-seq analysis of the human allograft kidney biopsy tissue.
FastProNGS: fast preprocessing of next-generation sequencing reads.
Analysis of allele-specific expression using RNA-seq of the Korean native pig and Landrace reciprocal cross.
A Next-Generation Sequencing-Based Approach to Identify Genetic Determinants of Antibiotic Resistance in Cambodian Helicobacter pylori Clinical Isolates.
Next-Generation Sequencing in Acute Lymphoblastic Leukemia.
Phylogenomics
On the origin of the New World Pyrgomorphidae (Insecta: Orthoptera).
NGS-Indel Coder: A pipeline to code indel characters in phylogenomic data with an example of its application in milkweeds (Asclepias).
The Phylogeny and Evolutionary History of Arthropods.
Post-glacial colonization of northern coastal habitat by bottlenose dolphins: A marine leading-edge expansion?
The complete chloroplast genome of Fagus crenata (subgenus Fagus) and comparison with F. engleriana (subgenus Engleriana).
A new species of the genus Cristimenes Ďuriš & Horká, 2017 (Decapoda, Caridea, Palaemonidae).
Expression Analysis and Regulation Network Identification of the CONSTANS-Like Gene Family in Moso Bamboo (Phyllostachys edulis) Under Photoperiod Treatments.
A fish eye view of the mirror test.
RNA interference core components identified and characterised in Verticillium nonalfalfae, a vascular wilt pathogenic plant fungi of hops.
A fully resolved backbone phylogeny reveals numerous dispersals and explosive diversifications throughout the history of Asteraceae.
Characterization of a bacteriophage with broad host range against strains of Pseudomonas aeruginosa isolated from domestic animals.
Population Genetics
Aquatic adaptation and depleted diversity: a deep dive into the genomes of the sea otter and giant otter.
Novel microsatellite markers discovery in Patagonian toothfish (Dissostichus eleginoides) using high-throughput sequencing.
Chironomus sancticaroli (Diptera, Chironomidae) as a Sensitive Test Species: Can We Rely on Its Use After Repeated Generations, Under Laboratory Conditions?
Variation in recombination rate is shaped by domestication and environmental conditions in barley.
Fierce selection and interference in B-cell repertoire response to chronic HIV-1.
Genetic diversity of HLA system in two populations from Colima, Mexico: Colima city and rural Colima.
A genome-wide scan for genes under balancing selection in the plant pathogen Ralstonia solanacearum.
Population Dynamics
Ecological Modelling
News
New online tool added : MitoGenomeAssembler
New online tool added : GATKsnpSeq
New online tool added : Dada2MetaBarcoding
New online tool added : RADseqRefMap
Publications
Who's Afraid of Peer Review?
Efficient Implementation of MrBayes on Multi-GPU
Big data and the future of ecology
Events
Formation : Initiation à Bash et aux clusters de calcul. 06/11/2014. UM2
5ème Journée biodiversité et bioinformatique. 16 septembre 2014. CNRS. Montpellier
Formation : Introduction à la phylogénétique et la génomique avec R. 26/03/2014. UM2
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