Online tools Phylogenomics

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RAxML-VI-HPC

Phylogenetic reconstruction

 

Phylogenetic tree inference using maximum likelihood/rapid bootstrapping. On this portal, the baseModel is forced as GTRGAMMA for dna and PROTGAMMA for protein

Author(s)

Alexandros Stamatakis


Version

1


Subsections

Phylogenetic reconstruction


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RAxML (Randomized Axelerated Maximum Likelihood) is a program for sequential and parallel Maximum Likelihood based inference of large phylogenetic trees. It can also be used for post- analyses of sets of phylogenetic trees, analyses of alignments and, evolutionary placement of short reads.

It has originally been derived from fastDNAml which in turn was derived from Joe Felsentein’s dnaml which is part of the PHYLIP package.

Version 8 manual can be found here.

Author(s)

Alexandros Stamatakis


Version

8.0.23


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SUNDAJOY

Phylogenetic reconstruction

 

Analyse phylogenetic signals of genes vs. a supermatrix. ...

Author(s)

Celine Scornavacca, Khalid Belkhir and Frederic Delsuc


Version

0.0.1


Subsections

Phylogenetic reconstruction


Tags

Bio++


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SuperTriplets is a triplet-based supertree approach to phylogenomics. It infers supertrees with branch support values.

Author(s)

Ranwez V., Criscuolo A., Douzery E. J. P.


Version

1


Multiple alignment of protein-coding DNA sequences : Facilitates the multiple alignment of protein-coding DNA sequences by aligning the amino acids sequences they specify.

Author(s)

Bininda-Emonds


Version

1


Subsections

Tool - Alignment


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